| Name | Version | Summary | date |
| genes2genes |
0.2.0 |
A tool for aligning gene expression trajectories of single-cell reference and query systems |
2024-04-19 10:15:53 |
| scButterfly |
0.0.8 |
A versatile single-cell cross-modality translation method via dual-aligned variational autoencoders |
2024-04-07 07:42:32 |
| COSCST |
0.1 |
Single-cell RNA sequencing data excels in providing high sequencing depth and precision at the single-cell level, but lacks spatial information. Simultaneously, spatial transcriptomics technology visualizes gene expression patterns in their spatial context but has low resolution. Here, we present COSCST that combines these two datasets through autoencoder and supervised learning model to map single-cell RNA-seq data with spatial coordination and spatial transcriptomics with precise cell type annotation. |
2024-04-01 03:11:32 |
| scvelo |
0.3.2 |
RNA velocity generalized through dynamical modeling |
2024-03-17 19:25:47 |
| scbamtools |
0.5 |
High performance Cython + Python tools to process BAM files with tags as they arise in single-cell sequencing |
2024-03-14 20:54:22 |
| Beaconet |
1.0.7 |
A reference-free method for integration of multiple batches of scRNA-seq data. |
2024-02-26 13:30:36 |
| sclive |
0.0.0.1 |
Single cell analysis plotting functions with interactive and web development friendly outputs. |
2024-01-06 04:22:51 |
| trisicell |
0.2.3 |
|
2023-12-23 22:08:50 |
| topicvelo |
0.0.2 |
TopicVelo: Dissection and Integration of Bursty Transcriptional Dynamics for Complex Systems |
2023-12-12 22:54:16 |
| OnClass |
1.3 |
Single Cell Annotation based on the Cell Ontology |
2023-12-10 05:29:32 |
| scpram |
0.0.2 |
scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism |
2023-12-07 09:27:26 |
| atlasapprox |
0.2.0 |
Cell atlas approximations, Python API |
2023-11-20 11:04:44 |
| entrain |
0.0.79 |
A single-cell analysis package to elucidate environmental factors controlling cell differentiation in RNA velocity and spatial datasets. |
2023-10-27 01:50:20 |
| fitphylo |
1.0 |
A package for inferring CNA fitness evolutionary trees and CNAs' evolutionary efficiency. |
2023-10-13 02:38:13 |
| fitPhylo |
1.0 |
A package for inferring CNA fitness evolutionary trees and CNAs' evolutionary efficiency. |
2023-10-12 10:00:01 |
| cospar |
0.3.3 |
CoSpar: integrating state and lineage information for dynamic inference |
2023-09-29 02:10:37 |
| scphylo-tools |
0.0.3 |
|
2023-07-21 07:29:58 |
| entrain-spatial |
0.0.1 |
A single-cell analysis package to elucidate environmental factors controlling cell differentiation in spatial datasets. |
2023-06-23 07:11:59 |
| ocelli |
0.1.1 |
Single-cell developmental landscapes from multimodal data |
2023-05-09 14:33:05 |
| brooklyn-plot |
0.0.3 |
Gene co-expression and transcriptional bursting pattern recognition tool in single cell/nucleus RNA-sequencing data |
2023-04-06 17:53:00 |